抑制荧光假单胞菌生物被膜的乳酸菌的筛选、鉴定及全基因组分析

    Screening, identification, and whole-genome analysis of lactic acid bacteria against Pseudomonas fluorescens biofilm

    • 摘要:
      目的 荧光假单胞菌(Pseudomonas fluorescens)生物被膜的形成会加速水产品的腐败进程,引发食品安全风险。本研究旨在筛选对荧光假单胞菌生物被膜形成具有良好抑制作用的乳酸菌。
      方法 本研究先从发酵蔬菜样品中分离乳酸菌,再以荧光假单胞菌21F26为指示菌,通过牛津杯法进行初筛,再以结晶紫染色法进行复筛,然后利用16S 核糖体脱氧核糖核酸(16S rDNA)测序结合系统发育树鉴定筛选得到的菌株,并利用全基因组测序技术分析该菌株的遗传信息。
      结果 从发酵样品中筛得1株对指示菌生物被膜具有良好抑制作用的菌株A21抑制率达(91.55±3.74)%。该菌株被鉴定为植物乳植杆菌(Lactiplantibacillus plantarum)。全基因组测序结果表明,植物乳植杆菌A21基因组由1条染色体(全长3 220 179 bp)和5个质粒组成,共编码3 633个基因。根据功能基因预测结果,该菌株编码54个分泌蛋白,以及丰富的糖苷水解酶和糖基转移酶,预测到3类次级代谢产物基因簇,包括环内酯自诱导物、萜烯和Ⅲ型聚酮合酶。
      结论 本研究筛选获得对荧光假单胞菌生物被膜形成具有良好抑制作用的植物乳植杆菌A21,研究结果可为荧光假单胞菌生物被膜的绿色安全防控提供理论参考,同时丰富了乳酸菌源生物被膜抑制剂资源。

       

      Abstract:
      Objective Biofilm formation by Pseudomonas fluorescens can accelerate the spoilage of aquatic products and induce food safety risks. The purpose of this study was to screen lactic acid bacteria with excellent inhibitory effects on the biofilm formation of P. fluorescens.
      Methods In this study, fermented vegetable samples were first used to isolate lactic acid bacteria. Using P. fluorescens 21F26 as the indicator strain, primary screening was performed via the Oxford cup method, and then rescreening was carried out using the crystal violet staining method. The screened strain was subsequently identified by 16S rDNA sequencing combined with phylogenetic tree analysis, and whole-genome sequencing technology was applied to analyze its genomic information.
      Results One strain, designated A21, exhibiting good inhibitory effect on the biofilm of the indicator strain with an inhibition rate of (91.55±3.74)%, was obtained from fermented vegetable samples. This strain was identified as Lactiplantibacillus plantarum. Whole-genome sequencing results showed that the genome of L. plantarum A21 consists of one chromosome (3 220 179 bp) and five plasmids, encoding a total of 3633 genes. Based on the functional gene prediction results, this strain was found to encode 54 secreted proteins, as well as abundant glycoside hydrolases and glycosyl transferases. Three types of secondary metabolite gene clusters were predicted, including cyclic-lactone-autoinducer, terpenes and type Ⅲ polyketide synthases.
      Conclusion This study screened out L. plantarum A21, which showed excellent inhibitory activity against the biofilm formation of P. fluorescens. The results could provide theoretical basis for the green and safe prevention and control of P. fluorescens biofilm, and also enrich the resource pool of biofilm inhibitors originating from lactic acid bacteria.

       

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